The candidate we uncover in this walkthrough represents a biologically plausible lead backed by structural and genomic evidence but it still requires wet lab validation. What makes this meaningful is how dramatically it lowers the barrier to everyday biological workflows, turning days of fragmented database triage into a single collaborative session. While this session focused on a narrow amino acid window in Streptococcus pseudopneumoniae, researchers can take the conversation in any direction, such as layering in new filtering criteria, exploring different sequence lengths, or targeting other priority pathogens. By broadening the search from human commensals to environmental microbes and beyond, scientists can guide the agent across UniProt to discover novel AMP candidates at scale.
A shared 3D canvas for interactive collaboration
A protein's 3D structure can help us understand its biological function. Examining a candidate’s predicted fold in space is key. To provide this end-to-end workflow in a single workspace, we are introducing the Biomolecular Structure Viewer, a 3D visualization tool embedded directly into Antigravity.
The researcher and agent work together over a shared visual state. As the agent retrieves structures from AlphaFold Database or the scientist’s own predictions, it can dynamically drive the viewer. For instance, it can highlight key functional regions to visually explain its hypotheses. Crucially, this awareness flows both ways: actions like highlighting specific residues or pinning notes directly onto a binding pocket are synchronised back to the agent. A researcher can simply mark a region of interest in 3D space and ask, for example, "How might this β-strand affect Lipid II binding?", allowing the agent to immediately reason over the exact structural context the scientist is looking at.